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Protocols

 

 

 

 

 

 

 

 

 

Protocols and assays

1. Angiogenesis

  • Tube assay
  • Matrigel
      • Ring assay (no of rings)
      • ii. tube assay (length of the tube)
      • iii. Collateral (no and length of the tube)
  • In ovo assay (no, length, no of capillaries)
  • In vivo assay
        • Cotton plug assay (rat)
        • Matrigel assay (mouse)
        • Matrigel-Sponge assay (rat)
  • Scaffold (Growing blood vessels in 3D scaffolds)
        • i.Matrigel
        • Sodium alginate
        • Agar-serum

2. Permeability

  • Single cell trypan blue
  • Monolayer trypan blue/Albumin FITC

 

3. Migration

  • Wound healing
  • Single cell migration
  • Single Transwell chamber
    • Chemotaxis
    • Chemokinesis
  • Modified Boyden chamber (48 wells)
    • Chemotaxis
    • Chemokinesis

4. Nitric oxide estimation (cells/tissue/organ/animals)

  • DAF
    • Live cell Imaging
    • Live cell fluorimetry
  • GRIESS assay
  • Ultra-sensitive NO electrode
  • EPR (Spin trapping – Electron Paramagnetic Resonance spectroscopy)

 

5. Reactive Oxygen species and Oxidative stress assays

  •   Superoxide assay
    • Spin trapping (Electron Paramagnetic Resonance spectroscopy)
    • NBT assay
    • Pyrogallol (SOD activity) assay
  • TBA (lipid peroxidation)
  • Peroxynitrate - flurimetric assay with 1,2, 3 dihydrorhodamine
  • Glutathione assay

 

6. Co-culture model

 

  • (pericyte-endothelial cells)

 

7. 3D gel contraction assay

 

  • Contractile profile of contractile cells

 

8. Hypoxia

  • Normoxic hypoxia in hypoxia chamber
  • Real time imaging under hypoxia – Real time imaging hypoxia chamber

 

9. Microgravity

  • Treatment of cells and tissues under microgravity – clinostat (microgravity machine)
  • Hind limb suspension animal model – under standardization

10. Isolated organ/tissue physiology work

  • Isolated aorta ring contraction assay – kymograph
  • Isolated skeletal muscle contraction assay – kymograph

 

 

 

For further discussions, collaborations and comments contact suvro@au-kbc.org